PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RY734
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 130aa    MW: 13880.1 Da    PI: 7.6097
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RY734genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.6e-132953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  Araip.RY734 29 CSGCRNLLLYPVGASSVCCAVCNAV 53
                 ************************9 PP

2zf-LSD1474e-156892125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Araip.RY734 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                 ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.1E-132656IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.6E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-126892IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG  60
TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEGIN KHHRAEVQQL NQTIYRAKLN  120
DTETLLSWFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174851.17e-92PREDICTED: protein LOL1 isoform X2
SwissprotQ93ZB11e-47LOL1_ARATH; Protein LOL1
TrEMBLA0A067KEI25e-57A0A067KEI2_JATCU; Uncharacterized protein
STRINGVIT_02s0012g00990.t012e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3009822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-30lsd one like 1